The coding capacity of SARS-CoV-2 release_rdfee67nc5bxvde34bjq3c7yhu

by Yaara Finkel, Orel Mizrahi, aharon nachshon, Shira Weingarten-Gabbay, Yfat Yahalom-Ronen, Hadas Tamir, Hagit Achdout, Sharon Melamed, Shay Weiss, Tomer Isrealy, Nir Paran, Michal Schwartz (+1 others)


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Showing 1 - 30 of 40 references (in 587ms)

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A Novel Coronavirus from Patients with Pneumonia in China, 2019
Na Zhu, Dingyu Zhang, Wenling Wang, Xinwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang (+ more)
2020   New England Journal of Medicine
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A pneumonia outbreak associated with a new coronavirus of probable bat origin
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu (+ more)
2020   Nature
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Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
Nicholas T. Ingolia, Liana F. Lareau, Jonathan S. Weissman
2011   Cell
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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
S. Lee, B. Liu, S. Lee, S.-X. Huang, B. Shen, S.-B. Qian
2012   Proceedings of the National Academy of Sciences of the United States of America
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Comprehensive annotations of human herpesvirus 6A and 6B genomes reveal novel and conserved genomic features
Yaara Finkel, Dominik Schmiedel, Julie Tai-Schmiedel, Aharon Nachshon, Roni Winkler, Martina Dobesova, Michal Schwartz, Ofer Mandelboim (+ more)
2020   eLife
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Decoding Human Cytomegalovirus
N. Stern-Ginossar, B. Weisburd, A. Michalski, V. T. K. Le, M. Y. Hein, S.-X. Huang, M. Ma, B. Shen (+ more)
2012   Science
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High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling
Nerea Irigoyen, Andrew E. Firth, Joshua D. Jones, Betty Y.-W. Chung, Stuart G. Siddell, Ian Brierley, Matthew B. Frieman
2016   PLoS Pathogens
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The Nonstructural Proteins Directing Coronavirus RNA Synthesis and Processing [chapter]
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2016   Advances in Virus Research
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Continuous and Discontinuous RNA Synthesis in Coronaviruses
Isabel Sola, Fernando Almazán, Sonia Zúñiga, Luis Enjuanes
2015   Annual Review of Virology
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1981   Journal of Virology
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Polyadenylate in the Virion RNA of Mouse Hepatitis Virus
Yoshiaki YOGO, Norio HIRANO, Shigeo HINO, Hiroshi SHIBUTA, Minoru MATUMOTO
1977   Journal of Biochemistry (Tokyo)
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Proteomics of SARS-CoV-2-infected host cells reveals therapy targets
Denisa Bojkova, Kevin Klann, Benjamin Koch, Marek Widera, David Krause, Sandra Ciesek, Jindrich Cinatl, Christian Münch
2020   Nature
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Characterisation of the transcriptome and proteome of SARS-CoV-2 using direct RNA sequencing and tandem mass spectrometry reveals evidence for a cell passage induced in-frame deletion in the spike glycoprotein that removes the furin-like cleavage site [post]
Andrew D. Davidson, Maia Kavanagh Williamson, Sebastian Lewis, Deborah Shoemark, Miles W. Carroll, Kate Heesom, Maria Zambon, Joanna Ellis (+ more)
2020    unpublished
doi:10.1101/2020.03.22.002204 [PDF]

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Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
Nicholas T. Ingolia, Gloria A. Brar, Noam Stern-Ginossar, Michael S. Harris, Gaëlle J.S. Talhouarne, Sarah E. Jackson, Mark R. Wills, Jonathan S. Weissman
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Achieving a Golden Mean: Mechanisms by Which Coronaviruses Ensure Synthesis of the Correct Stoichiometric Ratios of Viral Proteins
E. P. Plant, R. Rakauskaite, D. R. Taylor, J. D. Dinman
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The architecture of SARS-CoV-2 transcriptome
2020   Cell

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The ORF7b Protein of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) Is Expressed in Virus-Infected Cells and Incorporated into SARS-CoV Particles
S. R. Schaecher, J. M. Mackenzie, A. Pekosz
2006   Journal of Virology
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Identification of a common deletion in the spike protein of SARS-CoV-2 [post]
Zhe Liu, Huanying Zheng, Runyu Yuan, Mingyue Li, Huifang Lin, Jingju Peng, Qianlin Xiong, Jiufeng Sun (+ more)
2020    unpublished
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SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology [post]
Natacha S. Ogando, Tim J. Dalebout, Jessika C. Zevenhoven-Dobbe, Ronald W. Limpens, Yvonne van der Meer, Leon Caly, Julian Druce, Jutte J. C. de Vries (+ more)
2020    unpublished
doi:10.1101/2020.04.20.049924 [PDF]

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Direct RNA sequencing and early evolution of SARS-CoV-2 [post]
George Taiaroa, Daniel Rawlinson, Leo Featherstone, Miranda Pitt, Leon Caly, Julian Druce, Damian Purcell, Leigh Harty (+ more)
2020    unpublished
doi:10.1101/2020.03.05.976167 [PDF]

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Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China
Aiping Wu, Yousong Peng, Baoying Huang, Xiao Ding, Xianyue Wang, Peihua Niu, Jing Meng, Zhaozhong Zhu (+ more)
2020   Cell Host and Microbe
doi:10.1016/j.chom.2020.02.001  pmcid:PMC7154514  pmid:32035028 [PDF]

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Improved Ribo-seq enables identification of cryptic translation events
Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L'Hernault, Daniel J Kowalewski, Michael P Weekes, Stefan Stevanovic, Ralf Zimmer (+ more)
2018   Nature Methods
doi:10.1038/nmeth.4631  pmcid:PMC6152898  pmid:29529017 

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
Alexander P. Fields, Edwin H. Rodriguez, Marko Jovanovic, Noam Stern-Ginossar, Brian J. Haas, Philipp Mertins, Raktima Raychowdhury, Nir Hacohen (+ more)
2015   Molecular Cell
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The Global Phosphorylation Landscape of SARS-CoV-2 Infection
Mehdi Bouhaddou, Danish Memon, Bjoern Meyer, Kris M. White, Veronica V. Rezelj, Miguel C. Marrero, Benjamin J. Polacco, James E. Melnyk (+ more)
2020   Cell
doi:10.1016/j.cell.2020.06.034  pmcid:PMC7321036  pmid:32645325 [PDF]

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Multi-level proteomics reveals host-perturbation strategies of SARS-CoV-2 and SARS-CoV [post]
Alexey Stukalov, Virginie Girault, Vincent Grass, Valter Bergant, Ozge Karayel, Christian Urban, Darya A. Haas, Yiqi Huang (+ more)
2020    unpublished
doi:10.1101/2020.06.17.156455 [PDF]

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Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses
Rachele Cagliani, Diego Forni, Mario Clerici, Manuela Sironi
2020   Infection, Genetics and Evolution
doi:10.1016/j.meegid.2020.104353  pmcid:PMC7199688  pmid:32387562 [PDF]

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A putative new SARS-CoV protein, 3a*, encoded in an ORF overlapping ORF3a [post]
Andrew E Firth
2020    unpublished
doi:10.1101/2020.05.12.088088 [PDF]

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Sarbecovirus comparative genomics elucidates gene content of SARS-CoV-2 and functional impact of COVID-19 pandemic mutations [post]
Irwin Jungreis, Rachel Sealfon, Manolis Kellis
doi:10.1101/2020.06.02.130955  pmcid:PMC7302193  pmid:32577641 [PDF]
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