FuzzyVariantsExplorer: Graded exploration of genomic data and fuzzy queries release_qee7vmpx7vhdxe5ajhyoo5nlbe

by Marco Falda

Released as a post by Cold Spring Harbor Laboratory.

2019  

Abstract

FuzzyVariantExplorer is a web interface and a fuzzy search system for exploring richly annotated genomes in a flexible way. The application allows combining vague constraints in expressive logical queries to retrieve graded sets of genes and their associated variants. Results can be further refined in a visual way by selecting keywords and categories that are extracted from the underlying annotations and weighted with a statistical significance score; keywords can then be clustered using Latent Dirichlet Allocation and explored visually. The system has been applied to a set of Saccharomyces cerevisiae genome annotations and a few variants.
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Date   2019-10-21
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