Interactions of Secondary DNA and Initial DNA on Single-Walled Carbon Nanotube Surfaces Studied by Photoluminescence, Atomic Force Microscopy, and Electrophoresis release_gy7ne4drmjgzncz7eblf3uq6fi

by Reona Toyofuku, Shusuke Ohura, Masahiro Ito, Yoshikazu Homma, Kazuo Umemura

Entity Metadata (schema)

abstracts[] {'sha1': '8a4bf4013143ab5f3c4e427bc0815866561cc269', 'content': 'We examined the interactions of initial single-stranded DNA (ssDNA) and secondary ssDNA molecules on single-walled carbon nanotubes (SWNTs). Thymine 30-mers (T30) and 30-mers from a partial sequence of <jats:italic>φ</jats:italic>x174 DNA (<jats:italic>φ</jats:italic>30) were used to prepare the DNA-SWNT hybrids. First, the hybrids were annealed at various temperatures without secondary DNA to evaluate the stability of the hybrids. As a result, aggregates of SWNTs were formed in the T30-SWNT hybrids, even at 54°C, although the <jats:italic>φ</jats:italic>30-SWNT hybrids were stable up to 84°C. Second, we added secondary DNA molecules during the annealing procedure. We reacted adenine 30-mers (A30) with the T30-SWNT hybrids and characterized the samples by combining agarose gel electrophoresis with/without ethidium bromide and atomic force microscopy (AFM) as well as near-infrared photoluminescence (PL) spectroscopy. Cross-links appeared to form among the SWNTs because of nonspecific hybridization of T30 and A30. PL measurements revealed clear shifts in the PL emission wavelength of SWNTs. However, when complementary <jats:italic>φ</jats:italic>30 DNA (c<jats:italic>φ</jats:italic>30) was reacted with <jats:italic>φ</jats:italic>30-SWNT hybrids, there was no significant difference in the PL spectra after the reaction, although electrophoresis suggested the hybridization of the c<jats:italic>φ</jats:italic>30 and <jats:italic>φ</jats:italic>30 DNA molecules. Our results suggest that the hybridization manner of DNA molecules with unnatural sequences greatly differs from that of natural DNA molecules.', 'mimetype': 'application/xml+jats', 'lang': None}
container {'state': 'active', 'ident': 'xuurhzj2hbfpzkwr44qxsocyy4', 'revision': '58b579ce-ce78-49ee-862e-66d15aa1d5dc', 'redirect': None, 'extra': {'country': 'gb', 'default_license': 'CC-BY', 'doaj': {'archive': ['LOCKSS', 'Portico'], 'as_of': '2022-07-06', 'default_license': 'CC-BY', 'seal': True}, 'kbart': {'clockss': {'year_spans': [[2014, 2015]]}, 'lockss': {'year_spans': [[2006, 2011], [2014, 2018]]}, 'portico': {'year_spans': [[2006, 2022]]}}, 'languages': ['en'], 'road': {'as_of': '2018-01-24'}, 'sherpa_romeo': {'color': 'green'}, 'urls': ['https://www.hindawi.com/journals/jnm/']}, 'edit_extra': None, 'name': 'Journal of Nanomaterials', 'container_type': 'journal', 'publication_status': None, 'publisher': 'Hindawi Limited', 'issnl': '1687-4110', 'issne': '1687-4129', 'issnp': '1687-4110', 'wikidata_qid': 'Q24039970'}
container_id xuurhzj2hbfpzkwr44qxsocyy4
contribs[] {'index': 0, 'creator_id': None, 'creator': None, 'raw_name': 'Reona Toyofuku', 'given_name': None, 'surname': None, 'role': 'author', 'raw_affiliation': 'Department of Physics, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 1628601, Japan', 'extra': {'seq': 'first'}}
{'index': 1, 'creator_id': None, 'creator': None, 'raw_name': 'Shusuke Ohura', 'given_name': None, 'surname': None, 'role': 'author', 'raw_affiliation': 'Department of Physics, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 1628601, Japan', 'extra': None}
{'index': 2, 'creator_id': None, 'creator': None, 'raw_name': 'Masahiro Ito', 'given_name': None, 'surname': None, 'role': 'author', 'raw_affiliation': 'Department of Physics, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 1628601, Japan', 'extra': None}
{'index': 3, 'creator_id': None, 'creator': None, 'raw_name': 'Yoshikazu Homma', 'given_name': None, 'surname': None, 'role': 'author', 'raw_affiliation': 'Department of Physics, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 1628601, Japan', 'extra': None}
{'index': 4, 'creator_id': '47jtw3g245b3xbmh7xd4fttvpi', 'creator': {'state': 'active', 'ident': '47jtw3g245b3xbmh7xd4fttvpi', 'revision': 'f3a4e953-d5e1-41d4-857c-7de5317c23a2', 'redirect': None, 'extra': None, 'edit_extra': None, 'display_name': 'Kazuo Umemura', 'given_name': 'Kazuo', 'surname': 'Umemura', 'orcid': '0000-0002-8073-3903', 'wikidata_qid': None}, 'raw_name': 'Kazuo Umemura', 'given_name': None, 'surname': None, 'role': 'author', 'raw_affiliation': 'Department of Physics, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 1628601, Japan', 'extra': None}
ext_ids {'doi': '10.1155/2019/2875439', 'wikidata_qid': None, 'isbn13': None, 'pmid': None, 'pmcid': None, 'core': None, 'arxiv': None, 'jstor': None, 'ark': None, 'mag': None, 'doaj': None, 'dblp': None, 'oai': None, 'hdl': None}
files[] {'state': 'active', 'ident': 'i6kui36y3be3hfsnwzruqfom5a', 'revision': '51d949a4-354d-4e15-9907-b51596294fa4', 'redirect': None, 'extra': {'shadows': {'scimag_doi': '10.1155/2019/2875439', 'scimag_id': '75938408'}}, 'edit_extra': None, 'size': 5769767, 'md5': '3bf12ea09aea17fd09f29bac992c2da2', 'sha1': 'cefd2d3d2d79e141db1fe4f477b092425123b6b1', 'sha256': '651039423ab970e1546170ab69297513c4d2052c3d9e7df563b8e814e71cfbbf', 'urls': [{'url': 'http://downloads.hindawi.com/journals/jnm/2019/2875439.pdf', 'rel': 'publisher'}, {'url': 'https://web.archive.org/web/20190503174345/http://downloads.hindawi.com/journals/jnm/2019/2875439.pdf', 'rel': 'webarchive'}], 'mimetype': 'application/pdf', 'content_scope': None, 'release_ids': ['gy7ne4drmjgzncz7eblf3uq6fi'], 'releases': None}
filesets []
issue
language en
license_slug CC-BY
number
original_title
pages 1-8
publisher Hindawi Limited
refs[] {'index': 0, 'target_release_id': None, 'extra': {'doi': '10.1246/cl.2003.456'}, 'key': '1', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 1, 'target_release_id': None, 'extra': {'doi': '10.1038/nmat877'}, 'key': '2', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 2, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2013.03.031'}, 'key': '3', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 3, 'target_release_id': None, 'extra': {'doi': '10.1016/j.cplett.2006.12.052'}, 'key': '4', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 4, 'target_release_id': None, 'extra': {'doi': '10.1166/jnn.2009.se47'}, 'key': '5', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 5, 'target_release_id': None, 'extra': {'doi': '10.1021/jp0709611'}, 'key': '6', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 6, 'target_release_id': None, 'extra': {'doi': '10.1021/ja1084942'}, 'key': '7', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 7, 'target_release_id': None, 'extra': {'doi': '10.1186/1556-276x-6-555'}, 'key': '8', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 8, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2012.06.018'}, 'key': '9', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 9, 'target_release_id': None, 'extra': {'doi': '10.3390/nano5010321'}, 'key': '10', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 10, 'target_release_id': None, 'extra': {'doi': '10.3390/nano6100180'}, 'key': '11', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 11, 'target_release_id': None, 'extra': {'doi': '10.1126/science.1078727'}, 'key': '12', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 12, 'target_release_id': None, 'extra': {'doi': '10.1021/nn201323h'}, 'key': '13', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 13, 'target_release_id': None, 'extra': {'doi': '10.1021/jp049148l'}, 'key': '14', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 14, 'target_release_id': None, 'extra': {'doi': '10.1126/science.1120792'}, 'key': '15', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 15, 'target_release_id': None, 'extra': {'doi': '10.1038/nnano.2007.261'}, 'key': '16', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 16, 'target_release_id': None, 'extra': {'doi': '10.1007/s12274-008-8022-7'}, 'key': '17', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 17, 'target_release_id': None, 'extra': {'doi': '10.1021/jp4102288'}, 'key': '18', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 18, 'target_release_id': None, 'extra': {'doi': '10.1021/nl071909j'}, 'key': '19', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 19, 'target_release_id': None, 'extra': {'doi': '10.1021/jp071316x'}, 'key': '20', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 20, 'target_release_id': None, 'extra': {'doi': '10.1021/jz3011145'}, 'key': '21', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 21, 'target_release_id': None, 'extra': {'doi': '10.1021/nl204182b'}, 'key': '22', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 22, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2016.03.068'}, 'key': '23', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 23, 'target_release_id': None, 'extra': {'doi': '10.1007/s00249-017-1200-3'}, 'key': '24', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 24, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2013.01.054'}, 'key': '25', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 25, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2014.06.008'}, 'key': '26', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 26, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2015.01.002'}, 'key': '27', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 27, 'target_release_id': None, 'extra': {'doi': '10.1016/j.bpj.2016.11.2431'}, 'key': '28', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 28, 'target_release_id': None, 'extra': {'doi': '10.1016/j.bpj.2016.11.2466'}, 'key': '29', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 29, 'target_release_id': None, 'extra': {'doi': '10.1007/s00249-016-1116-3'}, 'key': '30', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 30, 'target_release_id': None, 'extra': {'doi': '10.1016/j.apsusc.2015.12.144'}, 'key': '31', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 31, 'target_release_id': None, 'extra': {'doi': '10.1002/adfm.201203816'}, 'key': '32', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 32, 'target_release_id': None, 'extra': {'doi': '10.1039/c0jm02695f'}, 'key': '33', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 33, 'target_release_id': None, 'extra': {'doi': '10.1038/srep00733'}, 'key': '34', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 34, 'target_release_id': None, 'extra': {'doi': '10.1246/cl.2011.730'}, 'key': '35', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 35, 'target_release_id': None, 'extra': {'doi': '10.1002/chem.201504533'}, 'key': '36', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 36, 'target_release_id': None, 'extra': {'doi': '10.1021/jp055044e'}, 'key': '37', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 37, 'target_release_id': None, 'extra': {'doi': '10.1080/15421400802458183'}, 'key': '38', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 38, 'target_release_id': None, 'extra': {'doi': '10.1080/1536383x.2010.488532'}, 'key': '39', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 39, 'target_release_id': None, 'extra': {'doi': '10.1021/ja102673m'}, 'key': '40', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 40, 'target_release_id': None, 'extra': {'doi': '10.1002/smll.200700141'}, 'key': '41', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 41, 'target_release_id': None, 'extra': {'doi': '10.1021/acs.jpcc.5b02114'}, 'key': '42', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 42, 'target_release_id': None, 'extra': {'doi': '10.1038/nature08116'}, 'key': '43', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 43, 'target_release_id': None, 'extra': {'doi': '10.1021/acs.jpcc.5b05087'}, 'key': '44', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 44, 'target_release_id': None, 'extra': {'doi': '10.1016/j.colsurfb.2017.10.055'}, 'key': '45', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 45, 'target_release_id': None, 'extra': {'doi': '10.1021/jp810892z'}, 'key': '46', 'year': None, 'container_name': None, 'title': None, 'locator': None}
{'index': 46, 'target_release_id': None, 'extra': {'doi': '10.1007/s00339-003-2460-6'}, 'key': '47', 'year': None, 'container_name': None, 'title': None, 'locator': None}
release_date 2019-04-11
release_stage published
release_type article-journal
release_year 2019
subtitle
title Interactions of Secondary DNA and Initial DNA on Single-Walled Carbon Nanotube Surfaces Studied by Photoluminescence, Atomic Force Microscopy, and Electrophoresis
version
volume 2019
webcaptures []
withdrawn_date
withdrawn_status
withdrawn_year
work_id wf7vw7sduzeihduo6zjnfhz5km
As JSON via API

Extra Metadata (raw JSON)

crossref.alternative-id ['2875439', '2875439']
crossref.funder [{'DOI': '10.13039/501100001691', 'award': ['26400436'], 'doi-asserted-by': 'publisher', 'name': 'Japan Society for the Promotion of Science'}]
crossref.license [{'URL': 'http://creativecommons.org/licenses/by/4.0/', 'content-version': 'unspecified', 'delay-in-days': 0, 'start': '2019-04-11T00:00:00Z'}]
crossref.subject ['General Materials Science']
crossref.type journal-article